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Re: [Bkchem-user] Error message

Subject: Re: [Bkchem-user] Error message
From: Beda Kosata
Date: Thu, 22 Nov 2007 08:20:32 +0100
Unfortunately I am not able to reproduce this error. Is it possible that
some parts of an older bkchem version remained on your system? Such
clash between versions is the only reason I can imagine for such a behavior.

        Best regards

                Beda


Beda Kosata wrote:
> This is strange, I will try to have a look at it.
> 
> Thanks for reporting it.
> 
>       Best regards
> 
>               Beda
> 
> FyD wrote:
>> Quoting Beda Kosata <kosatab@xxxxxxxx>:
>>
>>> this is a known problem. It is fixed in the 0.12.0 preview releases
>>> which are in many ways better than 0.11.6, so there should be no reason
>>> not to upgrade.
>> It works fine after a "local" install if I run:
>> [fyd@lynx ~]$ python bkchem-0.12.0_pre7/bkchem/bkchem.py
>>
>> However, I get the following error message if do a "general" install and
>> I simply run:
>> [fyd@lynx ~]$ bkchem
>> Traceback (most recent call last):
>>    File "/usr/lib/python2.5/site-packages/bkchem/bkchem.py", line 165,
>> in <module>
>>      myapp.initialize()
>>    File "/usr/lib/python2.5/site-packages/bkchem/main.py", line 100,
>> in initialize
>>      self.init_singletons()
>>    File "/usr/lib/python2.5/site-packages/bkchem/main.py", line 437,
>> in init_singletons
>>      Store.gm.add_template_from_CDML( "groups.cdml")
>>    File "/usr/lib/python2.5/site-packages/bkchem/temp_manager.py",
>> line 66, in add_template_from_CDML
>>      m = molecule( Store.app.paper, package=tmp)
>>    File "/usr/lib/python2.5/site-packages/bkchem/molecule.py", line
>> 89, in __init__
>>      self.read_package( package)
>>    File "/usr/lib/python2.5/site-packages/bkchem/molecule.py", line
>> 340, in read_package
>>      bnd = bond( standard=std, package=b, molecule=self)
>>    File "/usr/lib/python2.5/site-packages/bkchem/bond.py", line 95, in
>> __init__
>>      self.read_package( package)
>>    File "/usr/lib/python2.5/site-packages/bkchem/bond.py", line 1117,
>> in read_package
>>      self.order = int( type[1])
>> IndexError: string index out of range
>>
>> Thanks, F.
>>
>>
>>
>>
>>
>>
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>>
> 
> 
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